SE2650113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7081
  • Oryza sativa
  • SE2650113
  • PIF/harbinger
  • To7
  • Chr10:13052494-13052836
  • GGT
  • GGTGGTGTTTGGATCGGGGACTAAATTTTAGTCTATGTCAAATCGGATGTTTGGACACTAATTAGACGTATTAAACGTAGACTAATAATAAAACTAATTGCATAA

Secondary structure and sequence

TSD    TIR
5'



3'
              -  G                 A     A   G                   GAC                   A        A   G     ATGAG           -TA        T  A G         TA   A      AC    TTACTG
GGTGGTGTTTGGAT CG GGACTAAATTTTAGTCT TGTCA ATC GATGTTTGGACACTAATTA   GTATTAAACGTAGACTAAT ATAAAACT ATT CATAA     AGCTGATTCGC   ACAAATTT TT A TCTAATTAA  CAT ATTAGC  ATGT      
|||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||||||||||||   ||||||||||||||||||| |||||||| ||| |||||     |||||||||||   |||||||| || | |||||||||  ||| ||||||  ||||      T
CCACTACAAACCTA GT CTTGATTTAAAATTAGG ATAGT TAG CTATAAACCTGTGATTAAT   CATAATTTGCATCTGATTA TATTTTGA TAA GTATT     TTGATTAAGCG   TGTTTAGA AA T GGATTAATT  GTA TAATCG  TACA      
              T  A                 G     G   A                   ATT                   C        G   G     GGGAA           CTC        T  C G         AG   C      GA    CTACGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End