SE2650114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7082
  • Oryza sativa
  • SE2650114
  • PIF/harbinger
  • To7
  • Chr02:29356531-29356869
  • GGC
  • GGCCCTGTTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
    CCC        TCCCACTCCAAAATTTAACACCAT    CATCGAACGTTTGAACACATGCATGAAGTATTAAATATAAGCTAAAAAAATAACTAATTGCATAAATTGCGGCTAATTTACGATACGAATCTTTTAAGCCTAATTGTTCTATGATTTGACAATGTGGTGCTACAGTAAAC
  GG   TGTTTAGA                        GTCA                                                                                                                                            
  ||   ||||||||                        ||||                                                                                                                                            A
  CC   ACAAATCT                        ATGT                                                                                                                                            
CC  --C        ------------------------    CCCCACATTTCAAAACTTCGCAGTGTAGCCCATAATATGTCCCACAGCGTATCCCACAAGCCCATGATTATTTTTTTTGATTAATCAAGTCATTTGACGCTCTACTTAAATAATTCGGATTAATTAGACAGTAATCGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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