SE2650118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7086
  • Oryza sativa
  • SE2650118
  • PIF/harbinger
  • To72
  • Chr03:20582343-20582621
  • GGG
  • GGGGTTGTTTGGTTCGTGACCACATGTTGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
              C   -  CAC        ACACT      CACCTCAAG  A G        A     -    C     --       TCATT         G   AAGATTCTTTTT      C    GTCCC    -     TGTCTCA
GGGGTTGTTTGGTT GTG AC   ATGTTGCC     TTGCCA         TT G CAGCTTTG GTAAG TTAG CAGAC  GTTTGGT     GCCACACTT TGG            CTAGCA TTTG     ACAT GTCAT       
|||||||||||||| ||| ||   ||||||||     ||||||         || | |||||||| ||||| |||| |||||  |||||||     ||||||||| |||            |||||| ||||     |||| |||||        
CCCCAACAAACCAA TAT TG   TGTAACGG     AACGGT         AA C GTTGGAAC TATTC AATC GTTTG  TAAACCG     TGGTGTGAA ACC            GATCGT AGAT     TGTA CGGTA       
              A   A  -AT        ATCCC      -ATCAAAAG  - G        G     C    T     TT       -----         -   ------------      T    ---AT    A     TGAAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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