SE2650119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7087
  • Oryza sativa
  • SE2650119
  • PIF/harbinger
  • To73
  • Chr03:26253412-26253787
  • CAG
  • GTCTGTTTGGTTGGAGGGA

Secondary structure and sequence

TSD    TIR
5'



3'
CA  C        ---TG      GTTTCTA  A               ---A     --   -  CTATTAACTGTT    -     T  GGAACATGGAAATTTTGGTGGGATGGGGATGGAGAATTGAGGAATGAACTCCCTCCTTTTCAATACCTGGGTAAGGGCAGGTAATTGGGAGGGAATTCCTCCTTTACTTCGC
  GT TGTTTGGT     GAGGGA       GG GGGATTGGGAGTTTA    AGGGA  TGA GG            TTGT TTGGT GG                                                                                                                
  || ||||||||     ||||||       || |||||||||||||||    |||||  ||| ||            |||| ||||| ||                                                                                                                 
  CG ACAAACCG     CTCCCT       TC CCCTAACCCTCAAAT    TCCCT  ACT CC            CTCT ATTCT AC                                                                                                                
GC  A        TTGAA      -------  -               GTGC     TA   A  -----------A    A     -  CCTTAAACTAAAAAGTAGAGTCAGAGAACAAACCATCTCCACCACCTTTAACTATCCCTCAAATCAACCTCTAATCTAGTAATTACTTTTGCCTACCGACTTTAAACAAATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End