SE2650120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7088
  • Oryza sativa
  • SE2650120
  • PIF/harbinger
  • To74
  • Chr01:24081570-24081853
  • GGG
  • GGGCAAGTTTTATAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
        T              GTGGTCACATATAATTTTATCTAAATCATCTACACATTAATTTAGAGGTAATAAATACAATAGATTGCATCTATTTACACTACACCCAATATATTTGCTACCAATCCACTTCTCTCTTT
GGGCAAGT TTATAATAGAGGAG                                                                                                                       
|||||||| ||||||||||||||                                                                                                                        
CCCGTTCA GATATTAGTAGAAT                                                                                                                       
        T              AGTGATTAAGGTTCTACGGTATATCTGAGTTTACTACTACACCTCCTCTCTTCTCTCTCTTCTCGTCGGTGGGGAGTACGTTCCCCATTGGAGGTATGTTCAAAGTTCTTTACCTTCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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