Plant MITE

SE2650121

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7089
Oryza sativa
SE2650121
PIF/harbinger
To75
Chr11:23102239-23102510
GGT
GGTCTCCTTTAATGGTTGAGCTAG

Secondary structure and sequence

TSD TIR

5'

3'

             --  T    C   TGCA          ---     CCACCTTATACAAGAGATAGCAAAAAGTCTACCTTTCCAATAGGTTGTCTCATAGCACATTGTTCAAAATGCTTTGGGTTACATAATCCCTC
GGTCTCCTTTAAT  GG TGAG TAG    CTAGCTCATG   CTTGT                                                                                            
|||||||||||||  || |||| |||    ||||||||||   |||||                                                                                            T
CCGGAGGAGGTTG  CC ATTC GTC    GATCGAGTAT   GAGGT                                                                                            
             TT  T    A   ----          TTA     GTAGTCGAAAACATACTACACCTTCTCTTTCTTCTATTCCTCTCTCTTACGTGATAGAGAAGAAGTTCTCGATTCGAGGATTTCTTTTACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650121

GGTCTCCTTTAATGGTTGAGCTAGTGCACTAGCTCATGCTTGTCCACCTTATACAAGAGATAGCAAAAAGTCTACCTTTCCAATAGGTTGTCTCATAGCACATTGTTCAAAATGCTTTGGGTTACATAATCCCTCTCACATTTTCTTTAGGAGCTTAGCTCTTGAAGAAGAGATAGTGCATTCTCTCTCCTTATCTTCTTTCTCTTCCACATCATACAAAAGCTGATGTGGAGATTTATGAGCTAGCTGACTTATCCTTGTTGGAGGAGGCC

Copy Cancel