Plant MITE

SE2650122

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7090
Oryza sativa
SE2650122
PIF/harbinger
To76
Chr12:26126893-26127081
GGG
GGGGTTGTTCAGATTGATGTCA

Secondary structure and sequence

TSD TIR

5'

3'

                 ATG   TTTC     ATATCATTT     -    GTTGCTAAAGACGTGCATCCATTTAGTTTTTTTTACCAAACTTTAGTA
 GGGGTTGTTCAGATTG   TCA    AAACC         TTTGG TAAA                                                
 ||||||||||||||||   |||    |||||         ||||| ||||                                                A
 CCCCGACAAGTCTAAC   GGT    TTTGG         ATAAT TTAA                                                
C                ATT   TTTA     --------A     C    ACTGTTAAATCGTTATAACGGTTCAAAACCGTACTAAAAGAATTCATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650122

GGGGTTGTTCAGATTGATGTCATTTCAAACCATATCATTTTTTGGTAAAGTTGCTAAAGACGTGCATCCATTTAGTTTTTTTTACCAAACTTTAGTAAATACTTAAGAAAATCATGCCAAAACTTGGCAATATTGCTAAATTGTCAAATTCTAATAAGGTTTATTTTGGTTACAATCTGAACAGCCCCC

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