Plant MITE

SE2650123

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7091
Oryza sativa
SE2650123
PIF/harbinger
To77
Chr03:16505057-16505345
GGC
GGCTATCTCCAACA

Secondary structure and sequence

TSD TIR

5'

3'

    A         ATG    -   AAATACAATACGCATTTCACGTTTGCATAGCGCTACAGTCAAAGAGTTCAATACCTATTTTTGGTCTTCTCCAACAATAAAACCTAAAAGAGAACCCTTACTGCAAATAGGTCTTCAGGAG
GGCT TCTCCAACA   AAAC CCA                                                                                                                         
|||| |||||||||   |||| |||                                                                                                                         A
CTGA AGAGGTTGT   TCAC GGG                                                                                                                         
    C         ---    T   TATTCCCGTGGGTTTGGGTTTTACCCAGAAGCTATCATGATAAAGTCGGAGGTTGTCTCATGGATGTGTCTTCTGGGTAAAATGCACGATATTCTCCATATTGAATTTAGTCTCATATGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650123

GGCTATCTCCAACAATGAAACCCAAAATACAATACGCATTTCACGTTTGCATAGCGCTACAGTCAAAGAGTTCAATACCTATTTTTGGTCTTCTCCAACAATAAAACCTAAAAGAGAACCCTTACTGCAAATAGGTCTTCAGGAGAGAGTATACTCTGATTTAAGTTATACCTCTTATAGCACGTAAAATGGGTCTTCTGTGTAGGTACTCTGTTGGAGGCTGAAATAGTACTATCGAAGACCCATTTTGGGTTTGGGTGCCCTTATGGGTCACTTGTTGGAGACAGTC

Copy Cancel