Plant MITE

SE2650124

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7092
Oryza sativa
SE2650124
PIF/harbinger
To78
Chr03:35135740-35135994
GGG
GGGCTGGTTTGGTTTGAGGCCTAAATTAGGC

Secondary structure and sequence

TSD TIR

5'

3'

   C            A      AAT     TTACCAATA       ATTCCAAT  T  TT   GTCTA TTGGTTTGAAGCCAAATTTTGGCATGCATAAGAAAATAGGTCATTTCAATAGTGAACTTGGGCTATTTT
GGG TGGTTTGGTTTG GGCCTA   TAGGC         TTTGGCA        AG GT  AGT     T                                                                     
||| |||||||||||| ||||||   |||||         |||||||        || ||  |||     |                                                                      
CCC ACCAAACCAAAC CCGGAT   ATCCG         GAATGGT        TT AA  ACA     G                                                                     
   A            A      -CT     ---------       --------  A  --   ----- TTACTGTTTAAAACCGTTCAAAACCGTACTAATTAAAACCATTCCATTTCAATACAAACCTAACTTCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650124

GGGCTGGTTTGGTTTGAGGCCTAAATTAGGCTTACCAATATTTGGCAATTCCAATAGTGTTTAGTGTCTATTTGGTTTGAAGCCAAATTTTGGCATGCATAAGAAAATAGGTCATTTCAATAGTGAACTTGGGCTATTTTGGCTTCAATCCAAACATAACTTTACCTTACCAAAATTAATCATGCCAAAACTTGCCAAAATTTGTCATTGACAAAATTTGGTAAGGCCTATCTAGGCCACAAACCAAACCAACCC

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