SE2650125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7093
  • Oryza sativa
  • SE2650125
  • PIF/harbinger
  • To8
  • Chr02:6545887-6546108
  • GGT
  • GGTCCCCATCGTTTGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
   C C     TT     ---     - ---     -    --- AAAACGGCTTATTAGAAAATAAAAATGAATTTATAGGTAAAACTTTTATAAATGTGTTCTTAGTGACTTAA
GGT C CATCG  TGGCT   TATTT T   CTAAT AAGC   C                                                                       
||| | |||||  |||||   ||||| |   ||||| ||||   |                                                                       A
CCG G GTAGC  ACCGG   AGTCG T   TTTTT GGTT   A                                                                       
   A A     CT     ATT     G TTC     C    TAA ACTTAAAAATTTGAATTAAAACTCTAACTAAAACTCTATAAAAGTTGCATCAAAGAAAAAGTTGTAACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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