SE2640127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7095
  • Oryza sativa
  • SE2640127
  • CACTA
  • Ca2
  • Chr08:6185150-6185421
  • ACT
  • C

Secondary structure and sequence

TSD    TIR
5'



3' 
            A    TCCA   TGCATTTTTCTCTGCATATATCCAACCGTTCTTATTAACAGCCTCATCGGTTGGCCAAATACTTTGGCTGATTAGCCACAGCTATCTCCAATTCAGCCAAACTTCAATGCAAGTTAGCTT
             CTCT    ATA                                                                                                                        
             ||||    |||                                                                                                                        A
             TTTA    TTG                                                                                                                        
GTTATTAATTTAA    ---C   CTATTTACAAATAAGAAAGAGAATAATTCGGTGCATATACGATCTATCTAATCCACTTGGCAATCTAAATAACGGAGTAGTCTACCGTTTACGAAACCGACTAGTCGGTAAATTCGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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