SE2650130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7098
  • Oryza sativa
  • SE2650130
  • PIF/harbinger
  • To81
  • Chr03:11144353-11144636
  • GAG
  • GAGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
      AATCAATA       -TA    CTGGCTTCAAAAATCTAAATATCATATATAGCCAACATAATAGTACACTCATATAATCGTTAGTTGGAGATATATACTGCATCATTAATATATCATTCACCCATCTCTCTCACATAGT
GAGCAA        ATATAGT   ACTA                                                                                                                      
||||||        |||||||   ||||                                                                                                                       
CTCGTT        ATGTTAT   ACGG                                                                                                                      
      -------C       TCT    TATTCGTATAACATATTCAACGGTGTAGTGTAAACATAAATACACCTATCCATTCCTTTACTCTCTCTTTGTTTCGCCTGATATCTAAATATCGGTCGAAGTCGCACTCAAGGTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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