Plant MITE

SE2650132

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7100
Oryza sativa
SE2650132
PIF/harbinger
To83
Chr01:8885081-8885349
GGG
GGGGCTGTTTGGTTCCCAGCCACACTTT

Secondary structure and sequence

TSD TIR

5'

3'

   GC         C C   C       ACCATTACT  C    AAAAGTTGCCACACCTTGCCTAAGGTGAGGTGATCAAATTGTTAGCCACAACTTACTAAGCCTAAAGGAATCTTGCCACACTTTTTTGAGCCATT
GGG  TGTTTGGTT C AGC ACACTTT         TG CAAC                                                                                               
|||  ||||||||| | ||| |||||||         || ||||                                                                                               G
CCC  ACAAACCAA G TCG TGTGAAA         CG GTGT                                                                                               
   AC         C T   A       ---------  -    CAAACGGTGCGGATTCCAATCCGTTTAAACTGTCCACAAACCAACATCGGTGTCAACACCGTTCTAAGGGGAGGTTGTTTAACCCAGGGTGCACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650132

GGGGCTGTTTGGTTCCCAGCCACACTTTACCATTACTTGCCAACAAAAGTTGCCACACCTTGCCTAAGGTGAGGTGATCAAATTGTTAGCCACAACTTACTAAGCCTAAAGGAATCTTGCCACACTTTTTTGAGCCATTGACACGTGGGACCCAATTTGTTGGAGGGGAATCTTGCCACAACTGTGGCTACAACCAAACACCTGTCAAATTTGCCTAACCTTAGGCGTGGCAAACTGTGGCAAAGTGTAGCTTGCAACCAAACACACCC

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