Plant MITE

SE2650133

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7101
Oryza sativa
SE2650133
PIF/harbinger
To84
Chr03:9968321-9968635
GGG
GGGCATGTTCAATGGT

Secondary structure and sequence

TSD TIR

5'

3'

        T            C -   --  --     CTTAAATAATACAAGATTATTTAGAGACCATGTCTTTACAATAGTTGAGACAACAAAGTCTCTAATCATTAACTCAAAAAAATTCCTTTTGTTAATATTCTTTCCATATGTTTATCCTCATG
GGGCATGT CAATGGTAGAGA G GAT  AT  GGTCT                                                                                                                          
|||||||| |||||||||||| | |||  ||  |||||                                                                                                                          C
CCCGTACA GTTACCAACAGT T TCA  AG  AATCG                                                                                                                          
        T            - A   CC  AG     CAACGATTAATCCTTATGAACAACTGTACCTCCTTTCTCTTTCTCCTCTCTGTTTTGTAGCAACAATACGTACTGTTGCCGAATTGTTGCTGAGAATCAGTGATATTATACCTTTTTACCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650133

GGGCATGTTCAATGGTAGAGACGGATATGGTCTCTTAAATAATACAAGATTATTTAGAGACCATGTCTTTACAATAGTTGAGACAACAAAGTCTCTAATCATTAACTCAAAAAAATTCCTTTTGTTAATATTCTTTCCATATGTTTATCCTCATGCAACCATTTTTCCATATTATAGTGACTAAGAGTCGTTGTTAAGCCGTTGTCATGCATAACAACGATGTTTTGTCTCTCCTCTTTCTCTTTCCTCCATGTCAACAAGTATTCCTAATTAGCAACGCTAAGAGACCACTATTGACAACCATTGTACATGCCC

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