Plant MITE

SE2640134

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7102
Oryza sativa
SE2640134
CACTA
Ca3
Chr01:2495927-2496574
CAC
CACTACAAGAAAAATACTCTGTATAGACATTTT

Secondary structure and sequence

TSD TIR

5'

3'

        G      A   T       --      TCTAGTAC          CTTATC         -    ACAATGTAGAGGCATTTTAAAAAATGTCTAATAAGTGTCTTATGGTGAATTGTCTCTACAAACGAAGAGACATTTTATAAAATGTCTATAAGATGGTAGAGGCATTTTTTAGAGACACTAAATTGTACCGCAAACATATAAAACCAGTCCAAAAAAGAGAATAAAATAGTTTCCTTGCTTTTGATAAGTCTTGAACTCATGATCTTTTGGTTAAATCATTTTAATCTTCGATACACTAACCAACTCAACTCCATGTCA
CACTACAA AAAAAT CTC GTATAGA  CATTTT        TGTAGAGGCA      AAATGCCTT TACA                                                                                                                                                                                                                                                                  
|||||||| |||||| ||| |||||||  ||||||        ||||||||||      ||||||||| ||||                                                                                                                                                                                                                                                                  T
GTGATGTT TTTTTG GAG CATATCT  GTGAAA        ACATCTCCGT      CATTTAACG AGAT                                                                                                                                                                                                                                                                  
        G      -   -       CC      --------          --AAAA         A    GTTAGTCTTCAAAATATCACATCTCTGTGAAATATCTCTGTGAAATTTTTAACGGATCTTTTGAAAATGAGATCTCTGTAAAAATATAGTCAAACAATCTAAAATAGAACATCTCCGTAAGAAAGCCGTGATATTTTACGCAGATTATACATTTCCGTAAAACAACTCTGTAAAATTTGATACATCTCTGTGAAAAATCTTACTATTACACATGATTTGCTGATTTATATTCATTAATTTCCTTGTTCATATGTTCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2640134

CACTACAAGAAAAATACTCTGTATAGACATTTTTCTAGTACTGTAGAGGCACTTATCAAATGCCTTTACAACAATGTAGAGGCATTTTAAAAAATGTCTAATAAGTGTCTTATGGTGAATTGTCTCTACAAACGAAGAGACATTTTATAAAATGTCTATAAGATGGTAGAGGCATTTTTTAGAGACACTAAATTGTACCGCAAACATATAAAACCAGTCCAAAAAAGAGAATAAAATAGTTTCCTTGCTTTTGATAAGTCTTGAACTCATGATCTTTTGGTTAAATCATTTTAATCTTCGATACACTAACCAACTCAACTCCATGTCATTACTTGTATACTTGTTCCTTTAATTACTTATATTTAGTCGTTTAGTACACATTATCATTCTAAAAAGTGTCTCTACATAGTTTAAAATGTCTCAACAAAATGCCTTTACATATTAGACGCATTTTATAGTGCCGAAAGAATGCCTCTACAAGATAAAATCTAACAAACTGATATAAAAATGTCTCTAGAGTAAAAGTTTTCTAGGCAATTTTTAAAGTGTCTCTATAAAGTGTCTCTACACTATAAAACTTCTGATTGTAGAAGCAATTTACAAAATGCCTCTACAAAAGTGCCTCTATACGAGGTTTTTGTTGTAGTG

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