SE2650135

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7103
  • Oryza sativa
  • SE2650135
  • PIF/harbinger
  • To85
  • Chr01:34529054-34529447
  • GAG
  • AGCATCCGAGTAGCTCATCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
G       G        A    -AATT      -  CATACTC    TTAGATAGCCATATAAAAAGATTCTCACCCTATATAACTTTTCACTCTAACAGATCATCCATATTACATCCTACATATACCAACATCCTATATTTTACTAATATTTTTCAACTACCACACATTTTTACTCCTATTCCTCCCACCTTTCTCC
 AGCATCC AGTAGCTC TCTA     TCATCC TC       CTAT                                                                                                                                                       
 ||||||| |||||||| ||||     |||||| ||       ||||                                                                                                                                                        
 TCGTAGG TCGTCGAG AGAT     AGTAGG AG       ACCT                                                                                                                                                       
A       G        G    AGATC      T  ACTATAA    CATACCTTCTCTTTTTGTCACGAGGTCATCTCAGAGATAGTGTATGAGGTAAAAAACTCCAGGAGGTTTGGATCGGGAAGGATTCGGTTTATACCTCCAAGAGAGAGGAGTGAGGTAGGAGTTGATGGGTGAAGGGTTCTAAAAAAATTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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