SE2650136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7104
  • Oryza sativa
  • SE2650136
  • PIF/harbinger
  • To9
  • Chr03:7070173-7070475
  • GGG
  • GGGCAAGTACAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
     A      A -      -   GGTATGGTCTCTACGTCAATTAGAGGCTACCATATTACAATAGTTAAAACAATATGATCTCTAATCATTAATGTACCAAAATACTTTTTTACTAGTCATCTTTCCTTTGTTAGACTCGATGCAACGA
GGGCA GTACAA G GTAGAG ACC                                                                                                                               
||||| |||||| | |||||| |||                                                                                                                               A
CCCGT CATGTT C AGAAAT ATC                                                                                                                               
     A      A C      A   GCCAGAGAGAAGCAACAGTACGTTCGTATAAACTACTGTACCTTCTCTCTCCTTCTTCCTTTCTCTTTCTACCAACGATGCGTACTGTTGCCGTATCTCAGCTGAGAATCGTAAATAATCCTTTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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