Plant MITE

SE2650137

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7105
Oryza sativa
SE2650137
PIF/harbinger
To9
Chr06:24480329-24480622
GGG
GGGCATGTACAACGGT

Secondary structure and sequence

TSD TIR

5'

3'

      G     C   -CT  -     -        CTCTATTGCCATGCAAGTAAATTTGATGACATGGAAGAAAGAGAAATGAGTATGGTTGTTATGCATGACAACAGCTCAGAGTCGACTCTTAGCATTTATTAGAGCAGATTTT
GGGCAT TACAA GGT   TT ATTAG TGGTCTCT                                                                                                                
|||||| ||||| |||   || ||||| ||||||||                                                                                                                G
CCCGTA ATGTT CCA   CA TTTAT ATCGAGAT                                                                                                                
      A     T   TCT  A     A        ATAATAGATCTCTGATCGTAAGATGTTGTCAATCTCTGTTATATCAGAGATTAGTAATTACATAGTTTTATGAAAAAGAATGATAAGAAATGAAAGAAAGTAGTGGTACGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650137

GGGCATGTACAACGGTCTTTATTAGTGGTCTCTCTCTATTGCCATGCAAGTAAATTTGATGACATGGAAGAAAGAGAAATGAGTATGGTTGTTATGCATGACAACAGCTCAGAGTCGACTCTTAGCATTTATTAGAGCAGATTTTGTTGCATGGTGATGAAAGAAAGTAAAGAATAGTAAGAAAAAGTATTTTGATACATTAATGATTAGAGACTATATTGTCTCTAACTGTTGTAGAATGCTAGTCTCTAGATAATATAGAGCTAATATTTAACTCTACCTTTGTAAATGCCC

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