Plant MITE

SE2650138

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7106
Oryza sativa
SE2650138
PIF/harbinger
To9
Chr02:15895035-15895349
GGG
GGGCATATACAAAGGTAGAGTCTAATATGAGCTCTCT

Secondary structure and sequence

TSD TIR

5'

3'

      A     A   AGA        -  A       ATATTA  -     ACA    --   ------  ATCC    ACAATAGTAGAGACAATAAGATTTCTAAACCATTAATACACTAAATATTTTTTTATTATACTTCTTTCCTTTTCTCCACCCTCATGCAAC
GGGCAT TACAA GGT   GTCTAATA TG GCTCTCT      AT TAATG   TTAG  AGA      CT    TTCT                                                                                          
|||||| ||||| |||   |||||||| || |||||||      || |||||   ||||  |||      ||    ||||                                                                                           
CCCGTA ATGTT CCA   CAGATTAT GC CGAGAGA      GC ACAGT   ACGT  ATT      AC    TGCA                                                                                          
      C     A   ---        T  C       -----A  A     ---    CC   TAAACC  ----    CCTTCTTTCTCTCCCTTCCTTCCTCTTTGTAGTAACAATACGTACTGTCGCCGAGTCTCAGTTGAGAATCGCAAATAATTGCCTTTCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650138

GGGCATATACAAAGGTAGAGTCTAATATGAGCTCTCTATATTAATTAATGACATTAGAGACTATCCTTCTACAATAGTAGAGACAATAAGATTTCTAAACCATTAATACACTAAATATTTTTTTATTATACTTCTTTCCTTTTCTCCACCCTCATGCAACAAACTTTCCGTTAATAAACGCTAAGAGTTGACTCTGAGCCGCTGTCATGCATAACAATGATGTTTCTCCTTCCTTCCCTCTCTTTCTTCCACGTCACCAAATTTACCTGCATGACAACGAAGAGAGCCCGTTATTAGACACCATTGTACATGCCC

Copy Cancel