Plant MITE

SE2650139

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7107
Oryza sativa
SE2650139
PIF/harbinger
To86
Chr02:26922911-26923164
GGG
GGGCCTGTTTGGTTGGTGCCACATTTTGCCAC

Secondary structure and sequence

TSD TIR

5'

3'

     C       T  -G    A  TT       TCTTGA   AG   AGTTTGACCAAATGTAGTTAGTGTTTGGTTTGTTTCTATAACTTTGGCATGCCACACTTTCTACTCTTTTGATCCCACTAG
 GGGC TGTTTGG TG  TGCC CA  TTGCCAC      GGT  GTT                                                                                 
 |||| ||||||| ||  |||| ||  |||||||      |||  |||                                                                                 T
 CCCG ACAAACC AC  GTGG GT  AATGGTG      AAT  GGT                                                                                 
C    -       T  GG    A  TT       TCAAAA   --   TTCCATACCGTTCTACGTTTAACACACCGAATTTTAAACTATCGGTGTGAATCGTTTGAAACCGATTCTTTTCCCAGATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650139

GGGCCTGTTTGGTTGGTGCCACATTTTGCCACTCTTGAGGTAGGTTAGTTTGACCAAATGTAGTTAGTGTTTGGTTTGTTTCTATAACTTTGGCATGCCACACTTTCTACTCTTTTGATCCCACTAGTCATAGACCCTTTTCTTAGCCAAAGTTTGCTAAGTGTGGCTATCAAATTTTAAGCCACACAATTTGCATCTTGCCATACCTTTGGTAAAAAACTGTGGTAATTTGAGGTGGGCATCCAAACAGCCCC

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