Plant MITE

SE2630140

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7108
Oryza sativa
SE2630140
hAT
Hat1
Chr01:26360355-26360522
CAGTGGCG
CAGTGGCGGAGCCAG

Secondary structure and sequence

TSD TIR

5'

3'

   T       C   AATTT    AAA    - GACCC ATTAGTTGTATGTATATAATTTTGCCTTTATCTTCTAGTTTTTGAAGTTTT
CAG GGCGGAG CAG     TTCT   CCTA G     A                                                   
||| ||||||| |||     ||||   |||| |     |                                                   A
GTC CCGCCTC GTC     TCAT   CCCG C     G                                                   
   C       T   ----C    ---    T ----- ATCCCGACGTCGGGATGAAAGACTAGGATTTATAAGTAACTTTAAGGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630140

CAGTGGCGGAGCCAGAATTTTTCTAAACCTAGGACCCAATTAGTTGTATGTATATAATTTTGCCTTTATCTTCTAGTTTTTGAAGTTTTAAAATGGAATTTCAATGAATATTTAGGATCAGAAAGTAGGGCTGCAGCCCTAGCTGCCCTACTCCTGTCTCCGCCCCTG

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