SE2630141

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7109
  • Oryza sativa
  • SE2630141
  • hAT
  • Hat10
  • Chr01:43150078-43150566
  • CAAGGTTG
  • CAAGGTTGTCAGGATC

Secondary structure and sequence

TSD    TIR
5'



3'
            GA   G  --  A  GGT   - TCGTTTTACTCAAAGTAATATCGTACCGTAGGATCGTATTGTAGTATCGGGATACTATGGGATTTTCTTTTTTTAAGTTTAATTAATATTTATATTAATTATATATAGCCATTCTATATTAAAAAAATATAGTAATGATATATGTCATGCAAATAGAGATATTTATCGAGAGAAACCACGTTGGTTTTGATATATTTAGCTGATTTTTATATA
CAAGGTTGTCAG  TCG GA  TA TA   AGT A                                                                                                                                                                                                                     
||||||||||||  ||| ||  || ||   ||| |                                                                                                                                                                                                                     A
GTTCCAACAGTC  AGG GC  AG CA   TAA A                                                                                                                                                                                                                     
            AT   -  TA  -  ---   G TCATAGAATGCTATTATGCTAGGATGGTTCGGCTTTGCTATGGCTAGGGTGTATCATAGGATTATAAGTATCATAGAGCTAGTATGATAAGTAATGATGTGCTAGGATGTTTTAAAATCCACCATAGGGCTAAGATACTAGGGATGCTATGATGTTTTATAATAAATTTTATTGTACCAAAGTTTATTTATTATATTTATTTATACGAGTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End