SE2630142

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7110
  • Oryza sativa
  • SE2630142
  • hAT
  • Hat12
  • Chr01:10044563-10045182
  • TAGGGGTA
  • TAGGGGTAAAAACGGTACGGAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
       A                G      AACCATCTTTATCGTTTTCATATTTTTTTTGGAATCGAAATCGGAATCGGAAACCCCGGATACAAAAACGGAATCGAATATTATTGAAATCGAAAATGGAGCGAAAACGAACCAGCGCGAATACGGTAACGAAAATTTATCGGAATAAAAAACCCCTCAAACTGATAAATCCAATTGAATAAATTATCTATGTTTAAAAGAGTAATGTTGTTGATAAATCCCAATGTAGCACAAAAAATATTCTTATGTAATTTTAGATTTGCATAACAAATATTTTTT
TAGGGGT AAAACGGTACGGAAAC GATAGA                                                                                                                                                                                                                                                                                       
||||||| |||||||||||||||| ||||||                                                                                                                                                                                                                                                                                        
ATCCTCA TTTTGTCATGCCTTTG AAGGCC                                                                                                                                                                                                                                                                                       
       C                A      TAAGGCCTGGATAAAAGTTTTTGCCTTAGACAGCCAGCCTTAAAAAAGCCTTAAAAAGCCTTTGCCTTTGCTTAAGCCTTTATAAAAGAGCCTTTGCCTTAGCCTTTACTATTCCCGTCAAAGGCAGCCTTGAGCCTTAGCCAGCCTTTGAAAGGCCTTTAAAGGAGCCTTAAAGGCCTTTAAAGGAGCCTTAATGGTCTTTAAAACACTGACTTTATGGGAACTAAGAAAAAAATTCGTGATTTATCACTTATGGTATTACAAACCGACAATAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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