Plant MITE

SE2630144

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7112
Oryza sativa
SE2630144
hAT
Hat13
Chr06:22263360-22263515
CAGTGGCG
CAGTGGCGGAACTAAGTGTAACCTGTGGGGTCAGCTG

Secondary structure and sequence

TSD TIR

5'

3'

          A   --A   -T        G     --G   ------------------------    CACAGGTTTTTGCAAAATAGTC
CAGTGGCGGA CTA   GTG  AACCTGTG GGTCA   CTG                        ACCT                      
|||||||||| |||   |||  |||||||| |||||   |||                        ||||                      C
GTCACCGCCT GGT   CAC  TTGGACAC CCAGT   GAC                        AACG                      
          C   CGC   TT        G     ATA   ATTTTAAGAAATTCAAAATATACC    TTACATTTATAGTTATCAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630144

CAGTGGCGGAACTAAGTGTAACCTGTGGGGTCAGCTGACCTCACAGGTTTTTGCAAAATAGTCCAAAAACTATTGATATTTACATTGCAACCATATAAAACTTAAAGAATTTTACAGATATGACCGCACAGGTTTTCACCGCTGGCTCCGCCACTG

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