SE2630145

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7113
  • Oryza sativa
  • SE2630145
  • hAT
  • Hat14
  • Chr11:16810054-16810520
  • CAGGGGCG
  • CAGGGGCGGGCCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
      C        ----------      G  ATTGGGTATTCGAAATGGAAAGGGGATAAAAAAATGTTTTATAACACGAGCATAATATTTGGTACGTATGATCAACAATATGGTATTTTAGTACTGCTTATTGAATTAGAACTTGCGACAAGGTTTTTAGCAATTTCCTTGATCTATTGTGATATACTTTGTGAAAAAACATATGCAGTATAATCTACCAACCAAGTATATATCG
CAGGGG GGGCCTAG          GATTTT AG                                                                                                                                                                                                             
|||||| ||||||||          |||||| ||                                                                                                                                                                                                              
GTCCCC CCCGGGTC          CCCATA AG                                                                                                                                                                                                             
      A        GAGTTAAATT      -  TTTACTTATGGGTTCTAAAAATCTGTTTTTTATATATATACTCCATATATAAAGCATACATACGTCTCTTTATTTCTTTTATTTGCAATAACTAATTTTCTTCGGGTTGTTCTTTCCGATCGTCCGATCGAGGGAGTTTAAGCTTGGGTTAAATGTACCAACGGATTAAACACGTAATTGGTACGACACTACCGTACTATAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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