SE2630146

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7114
  • Oryza sativa
  • SE2630146
  • hAT
  • Hat15
  • Chr08:16842809-16842965
  • CAATGTTT
  • GTTTTAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAT         AGTG   TAAGGCATTTAGCGGTTAGCTTACAGCTATAGCCGCAGCTATATCGGGCTAAATGGAGCT
    GTTTTAAAT    GCC                                                            
    |||||||||    |||                                                            A
    CAAAATTTA    GAG                                                            
ATCC         ----   GGTGATATCGACAAACTCTTCCTAAGATCGATAAACGAGAGTACATGTTAAATCGGCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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