SE2630147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7115
  • Oryza sativa
  • SE2630147
  • hAT
  • Hat16
  • Chr11:19269708-19270450
  • CAGGGGCG
  • CAGGGGCGAAGCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
           --C   GATA   -    GTCGGGGTCATTACTAGCCATGGTCTATGTTTTCAAACAAAACGGATTGAAAACAACGCAATTTCGATGTTCCAACTTGGGACAAAAGTAGATTTTGAGTGAAATTTGGAATAGTTTTTCAAGAATTCAAATTTGAAATTGTAAAATTAAACCAAATTAATAAAAAAATATCAAATTTTGGTAAAAAAAAGCCATATTGCTATATTTGGAATCTAATTTTAAATCGAATTGGTGAACCCTGATACAATCTGGGTGTGTTCAGACCTAGCTATGGGATCTGAACCCTTCCCTCCCAGCACGCAAAATAGGGCGAGGTTACCACATGATTAATTAAGCATTATTAGC
CAGGGGCGAAG   CAG    AAT GATC                                                                                                                                                                                                                                                                                                                                                         
|||||||||||   |||    ||| ||||                                                                                                                                                                                                                                                                                                                                                          
GTCCCCGCTTC   GTC    TTA TGGC                                                                                                                                                                                                                                                                                                                                                         
           CAT   --AG   A    CCCAGTCATCTGGGGCTACTAAAATAAAATTGGAGAGTATAGGAGAAATAAAATGGTCGATACTGGGGCCACTTTTGTTTATAATCTGGGGCCACTGTAATTAACAACTAACAACACAATTTAAGGTTAACTGTTGATGTTTGCTATGACCGTCGTCGTTTATCTTTTAATGGATCGTAAATACTAATATGCAGTCGGCTTATACGTATATGAAACTCAAAAACTCTAAACTCTGGTACGTATTCCGGTCACCGAGTATTGAAAAGTTTAAGGGATCGTTTTATTAAAGATATCCTTTAATAAAATTTTTGGTATAATTAGATAACAGAAAGTTCAAAAAATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3