SE2630148

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7116
  • Oryza sativa
  • SE2630148
  • hAT
  • Hat17
  • Chr12:3003501-3003678
  • TAGTGGCG
  • TAGTGGCGGAGCCAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
   T       C    AATTGATCAC  --- TAAGGCCGAGTAGGGCTGACTTGATATGTTCTTAGCAAATATCTTTATATCTTCAGCTTT
TAG GGCGGAG CAAG          GC   C                                                            
||| ||||||| ||||          ||   |                                                            T
GTC CCGCCTC GTTC          CG   A                                                            
   C       T    ----CCACCC  TTA TCCCGAACTCGGGATCCGAATCCTGATTTAAGGGTAATTTTAGAAAACGTTTTATGACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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