Plant MITE

SE2630149

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7117
Oryza sativa
SE2630149
hAT
Hat18
Chr09:16383012-16383595
CAGGGCAG
CAGGGCAGTGCCGT

Secondary structure and sequence

TSD TIR

5'

3'

      A    -   CAAATTTGG   --    ATACAAGGGTCTAAGTAAGGCATAAATCAAGTACCAAATATAGCTAAAATAATATATATATTGTAAAGCAAATGTGATATATCAAGAATAGTATATTTTTTAACTCTTGTTTTGCATAATAAAAAAATGTCAAACTGAAAACGGAGAATGTTCGTTGCTGTTGCTAGCTTGCTGCCTAGTGCCTTGCTTGTTGGTTGCTTGCTAAGTTGCTATTCGCTGGTTGAATGAAAATATAAAATTGGATGAGTTGGCTGGCGGCCTGGT
CAGGGC GTGC CGT         AGG  CCCT                                                                                                                                                                                                                                                                        
|||||| |||| |||         |||  ||||                                                                                                                                                                                                                                                                        G
GTCCCG CACG GTA         CCG  CGCC                                                                                                                                                                                                                                                                        
      G    T   --------C   CA    GGGCACGCTGGCATGTCTCGGAGGTTTAAAAGTCCCGGAGTCTTTTTAGTCAGGTTGGCTTCTTCCGGGTACATAAGCACACTCCACTCTCGCAGTCTTGGGGCAAGCTCAGGCGCGTACAGAGGCGCGCCGCTGAAGCGCACGCACCGCGAAGCATAATAGTTGAGACTCGGGACTCCGGGGTGCCGCAAAACATAAGAGAAAAAAAAGCATAGACACTGAATAAGTCAAGCAGAGCTCAGAGCTGCAGAGCAGAGGAGGCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630149

CAGGGCAGTGCCGTCAAATTTGGAGGCCCTATACAAGGGTCTAAGTAAGGCATAAATCAAGTACCAAATATAGCTAAAATAATATATATATTGTAAAGCAAATGTGATATATCAAGAATAGTATATTTTTTAACTCTTGTTTTGCATAATAAAAAAATGTCAAACTGAAAACGGAGAATGTTCGTTGCTGTTGCTAGCTTGCTGCCTAGTGCCTTGCTTGTTGGTTGCTTGCTAAGTTGCTATTCGCTGGTTGAATGAAAATATAAAATTGGATGAGTTGGCTGGCGGCCTGGTGCTCGGAGGAGACGAGACGTCGAGACTCGAGACGAACTGAATAAGTCACAGATACGAAAAAAAAGAGAATACAAAACGCCGTGGGGCCTCAGGGCTCAGAGTTGATAATACGAAGCGCCACGCACGCGAAGTCGCCGCGCGGAGACATGCGCGGACTCGAACGGGGTTCTGACGCTCTCACCTCACACGAATACATGGGCCTTCTTCGGTTGGACTGATTTTTCTGAGGCCCTGAAAATTTGGAGGCTCTGTACGGTCGCACGGGCCGCACGCCCATGTGCACGGCCCTG

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