SE2630150

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7118
  • Oryza sativa
  • SE2630150
  • hAT
  • Hat2
  • Chr01:29335626-29335918
  • CAGTGTTC
  • GTGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
 CA T    TAAAAATC          G   CCTAGGCGCCCATTAGGCGCTAGGCGCCGGGTAGCCGCCGCGATTAGGCATTCAATGGTGCATTAGGCGGTTAAATTACTTAGGTAGTATTTTATTGCTATTTTAGTGTTATATAGTCT
   G GTTC        GGCCCTAGGT CCG                                                                                                                       
   | ||||        |||||||||| |||                                                                                                                        
   C CAAG        TCCGCGATCC GCG                                                                                                                       
GTA -    ----TTCT          -   ATCAACCCGCCTATCCCCCGCGGATCGCGGATTAACCGCGGATCCGGGGCGGATCCGCCGCGGATCCAGCCCAGTTTATCAATTTAAGTTCTTTAATCATCCGTATAACGTATCTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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