SE2630152

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7120
  • Oryza sativa
  • SE2630152
  • hAT
  • Hat20
  • Chr11:12958923-12959194
  • CAGTGGCG
  • CAGTGGCGGATCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
          -     AATTTTTTTA      G  A -   AA    AGAAAACAAATTAACAGGTAAACACAAATACATATAGCATTTTATCATAGATAAAAGTAAATTGCACTATTAGCTAATAACTAAGTATGATAATTA
CAGTGGCGGA TCTAG          GCCTGG CA A CCT  TGAT                                                                                                
|||||||||| |||||          |||||| || | |||  ||||                                                                                                G
GTCGCCGCCT GGGTC          CGGGTC GT C TGC  CCGT                                                                                                
          C     ----------      G  - G   --    CTGCAAGCCCGAGGCGGCGTAGGTAGGTATGTAATCTTGAATTTGATACCACGAATCGGTAATCGGATCGATGTATGTACGTGACAATCTAATCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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