SE2630153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7121
  • Oryza sativa
  • SE2630153
  • hAT
  • Hat21
  • Chr11:23208031-23208766
  • CAGTGTTG
  • CAGTGTTGTGGAAAACGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
             A     GTTAA   C   TAATACGTCCGATAATACGGATACGGAGATCAGTCCATCACGTCACGCCGATGCGGTCATCATTAGTCGGTAACAAACGCATAAATCCGATCATTACCGATTAAATCGTCCGTCTCCGTCTAATCAGCCGTATAATCGGCGTGATGACAAAGTCGATTCCACAATCCAGCTCATTAGCTGTGCCCTTTACTACTATTGACTAGAAGTTTGCTCTTCCGAAATTCTCACAAGGCAGCAAGATGTAAAATGACAAGGAACTGACTTCCTCTAAAGTTTGAACATGAGTTCCTTGATTTTGACGATGATCAGGTTATTGGAGTTTGTATTTGATGAAGCCGAT
CAGTGTTGTGGAA ACGGT     CGG CGT                                                                                                                                                                                                                                                                                                                                                    
||||||||||||| |||||     ||| |||                                                                                                                                                                                                                                                                                                                                                     
GTCACAACACCTT TGCCA     TAT GCC                                                                                                                                                                                                                                                                                                                                                    
             C     -----   -   TATAGCCTGCCTCTCTCATGGCGATTTGCCAATTAGCCTTACGCCTGCTAATTAGCCTTAAACCGCCTTTATATTGCAAAACTTTCATATACATGTATCAACTATTATCAAAAGGGAAAAACTATTTGTTTACGTATATTGAATTATATAAGGAAGATATATATAGGAATTTATCTTATTGGTATATACTATAAATTTATTCAAGTATTACCTATCGACAATGACATATAGAGTTAAGACTGCATCACTACCCAAAACAAGTATTACGTACTTTACTTAATAGTTCTCTTACATCATGTATCGTATTTACTGGCATTAGTTCCAGGGTTTATTGTATACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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