SE2630154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7122
  • Oryza sativa
  • SE2630154
  • hAT
  • Hat22
  • Chr11:5559263-5559752
  • CAGGGGCG
  • CAGGGGCG

Secondary structure and sequence

TSD    TIR
5'



3'
   G    AAGC    ATTTGAAAT          ----   A  AA    AA  ATGAGA       A   A    GATAACAAAG     CA     TCACCGTAAATAACAAGCAATGCGTAAACTAGTCCTTTAAGAAAAACTTGAATTTTAGCTCTTTAATAACATCATTGGAAGTTTGAAACTAGTCTTTATTGCTAAATTCTTTTAATGTAAACTATTGAATAATCTCACAAATAAGTATTATCTATTTTACTT
CAG GGCG    TAGG         TAGGGGGTGT    GGG TG  GATA  CC      CCGAATA CTA TATT          GAGAT  AATAG                                                                                                                                                                  
||| ||||    ||||         ||||||||||    ||| ||  ||||  ||      ||||||| ||| ||||          |||||  |||||                                                                                                                                                                  T
GTC CCGC    GTCC         ATCCCCCACG    CCC AC  TTAT  GG      GGTTTGT GAT GTGA          TGATG  TGGGG                                                                                                                                                                  
   A    ----    ---------          GTTT   -  GG    GG  --GATA       -   G    ----------     --     TACAAAATGAGATATAATTCCAATCGATTCTATTTATAAATAGATCAAATAAAACACATCGAACTTTCATAATAGCCAAATCAATCAATCGTTCAGATTTTTATAATCATTCTTTGTATTTTGTACTAGATATTTTAATCAAACACTAAAGAGTAGAAAAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End