SE2630155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7123
  • Oryza sativa
  • SE2630155
  • hAT
  • Hat22
  • Chr10:11709463-11709985
  • CAGTGGCG
  • CAGTGGCGAAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
              --         G  AGGGGGGTGTGGGGGAGAAAGTCATAAAACCGATTAACCAATATGAATAGTAAATGAGCCAAATAGTCACTACCGATAATAATCAATGTGTATATAAATATAGCTTCGTTGTAGCTAGATTATAAAACCATCATATGTTATGTTTTTTTCAAAAAAGCGGTTCAAATGTTCAATATAACAAGACATCATATGTTTTGCCTAAAAAACTTGAATTCAGTTCTTTCATAATATCATT
CAGTGGCGAAGCTA  GGATTTGAG TT                                                                                                                                                                                                                                           
||||||||||||||  ||||||||| ||                                                                                                                                                                                                                                            
GTCACCGCTTCGAT  CCCCCACGG CC                                                                                                                                                                                                                                           
              GG         -  TCCCCCGGTCGTGGGGGGATAGGGCTTGGGGGACCGACGATCATCATATAATGTCCCAATCCGTTAATCCGTCGTAGGTGACAATCCCGTAATCGTGCAATCTAATATCCGTCTGAGAGTCATGAATCAGAATACTAAAAGTAGAAAAGTTTCATTTTGTCTTTTACGAAAAATACTCTGATAAACCATCAAATGTAACTTTCTTAAATCGTTGTTCCTGACCAAGGTTTGAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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