SE2630156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7124
  • Oryza sativa
  • SE2630156
  • hAT
  • Hat24
  • Chr08:19476709-19477235
  • TAGGGATG
  • TAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
           ATTTTACCT         A     TGTGGATACCCGACCCGATGGGCACGGGCGTGGGTGTGACTTTTTACCCATGGGCACACCCGCCCGAGACCCGAAGACGTTATGGGTAATAGGCGGGTTTCATTTTTTACCCGTGGGTAACCCATGCCCGACCTGATACATATGTATTAGCTAATTTTGACTCATTTCTTAATTCTTATACCATTTCTCTCGGTTCATTTGTGATGCTAACTGATACTAAGTTGTGATGTAAT
TAGGGATGGCA         ATGGGTCCG GTATC                                                                                                                                                                                                                                         
|||||||||||         ||||||||| |||||                                                                                                                                                                                                                                         T
ATCCCTACCGT         TACCCAGCC CAGCC                                                                                                                                                                                                                                         
           ---------         -     CGTGCCCATCTCGTTTTGGTACGGGCTGGGCTACGAGCTGTAACGGGCGGGTTTGGGATGGGTGACCTCAATCGCCCGTTTTGAGGCACGGGCACGGGTACGGGTCGCCCGCGCCCATATAGGCCGCCCATGGGTTACCTAGAGTGAACTTATTATTGAACTTTCTATACATTAAATTATTTCTCTTTATTTTAGTTATTAAATGGTTTAATAGCCAATAGTTGTTATTAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3