Plant MITE

SE2630157

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7125
Oryza sativa
SE2630157
hAT
Hat27
Chr08:9239839-9240463
CAGTGGCG
CAGTGGCGGA

Secondary structure and sequence

TSD TIR

5'

3'

          ------CACACCCAT    CA      GTC         AGCTAT   --TC  -  CGCGCCACACCCCCAAACCTCATTTTAGTCCTATTTCTAATACATTAGTCATCAGTCTACTACTGAATAATCAGATAAATTAAGTATTTAAATAGGAACAAAAACATTTATGAATATTCGTGTATAAGTAGTACCATTTTGACCGTTTCTGATTTTGGCCATATATAAAATTCAATTTTCTTTCTATTTCTTTAGCGTATAATATAATATACAGTCAATAGTTAAACTGGTAAGTATATAAAAAAATCCA
CAGTGGCGGA               TAGA  GGGTGG   GGCTGGCCC      GGT    GT GT                                                                                                                                                                                                                                                          
||||||||||               ||||  ||||||   |||||||||      |||    || ||                                                                                                                                                                                                                                                           
GTCACCGCCT               GTCT  CCCGCC   TCGATCGGG      CCA    CG GT                                                                                                                                                                                                                                                          
          ACATCCAAATTTTAT    AC      GTC         ATTAAT   CTAC  T  TGCGTGTCTTTGGTATCAACGACCAAGTGCCGTAACCGCGTTGTCGCCTGCCGTGCTTGTAGCTCTTTCAATTGTTGCTTCTAACCATCAGCTTGTTTGCATATATTGAACATACATCTCTCTACTTTTTTTTACTCTTTAAGATAATCTGTTATTTCCCTTGGTGAAAGTTATCAAGCCCCCATATTTTGCTCTACTTTTTAATAAATCCCCAAATTCACGAAGTGGTTTTATCAAGTTCACTCATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630157

CAGTGGCGGACACACCCATTAGACAGGGTGGGTCGGCTGGCCCAGCTATGGTTCGTGTCGCGCCACACCCCCAAACCTCATTTTAGTCCTATTTCTAATACATTAGTCATCAGTCTACTACTGAATAATCAGATAAATTAAGTATTTAAATAGGAACAAAAACATTTATGAATATTCGTGTATAAGTAGTACCATTTTGACCGTTTCTGATTTTGGCCATATATAAAATTCAATTTTCTTTCTATTTCTTTAGCGTATAATATAATATACAGTCAATAGTTAAACTGGTAAGTATATAAAAAAATCCATTTTACTCACTTGAACTATTTTGGTGAAGCACTTAAACCCCTAAATAATTTTTCATCTCGTTTTATACCCCCGAACTATTGAAAGTGGTTCCCTTTATTGTCTAATAGAATTTCTCATTTTTTTTCATCTCTCTACATACAAGTTATATACGTTTGTTCGACTACCAATCTTCGTTGTTAACTTTCTCGATGTTCGTGCCGTCCGCTGTTGCGCCAATGCCGTGAACCAGCAACTATGGTTTCTGTGCGTTGTGCCATCACCTAATTAGGGCTAGCTCTGCCGCCCCATCTGTATTTTAAACCTACATCCGCCACTG

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