SE2630158

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7126
  • Oryza sativa
  • SE2630158
  • hAT
  • Hat3
  • Chr10:13745297-13745915
  • TAAAGATG
  • AGATGGCAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAA         C     CATATC   C   - TCTCTTGCCCCATATCCACACCCACGATGTCTAAATACTCTCACTTAAATACCCACACCCGTCACGGGTACAAAATTGTCCCCATACCCACACCCATGCGGGTAACGAGTATCCAACGGGTACCCATACCCATATAATTGACTTGTAATATTTATAATTTTGTACTATAATTAGCCATATTAGAGTTGTAAACCATCAATATTTTCTCTAGTAACAATGCTATTAATATTAGTGTTCAAAGGCGAGTAAAAAAATTATACAACCACATTACATAATCAAG
   AGATGGCAA GGGTG      TAT GGG T                                                                                                                                                                                                                                                                                        
   ||||||||| |||||      ||| ||| |                                                                                                                                                                                                                                                                                        A
   TCTATCGTT CCCAT      GGG TAT G                                                                                                                                                                                                                                                                                        
ATC         A     ------   -   T GGCTCTGGGCTGCCCAAAAATGAGATAATCCTCGGTTAGCACAAGATTGAGAATATGGGTACCCAGATGATTGCCCGCTTTTGAGAATGGGTAACCCATGCACCCATACCCAGGCAAGAAATGGGTGGGCATGGGTGGTTGGGCACCCATCTTTTTTGGGCAACTAACTCAGATTTTGATACTCGTAATATTGAGAGTCGCTGATGATTTAGTATCGTATTTTGAAGAAAGTGTAGAATTTCGTAACGAATCAGATCAATATACTTTAATAATAAACTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End