Plant MITE

SE2630159

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7127
Oryza sativa
SE2630159
hAT
Hat28
Chr07:26013360-26013583
TAGGGATG
TAGGGATGCAAGCGGGCTAACACGCAAGCTCGCTTA

Secondary structure and sequence

TSD TIR

5'

3'

                CTA  A   A          TAAGCA     --  C    --      CAACTGACTTGTGAGTTACCTACTAATTTAATCTAAAAATAGGTTTATGGGTT
TAGGGATGCAAGCGGG   AC CGC AGCTCGCTTA      AAATT  AG GGGT  ACTCAC                                                     
||||||||||||||||   || ||| ||||||||||      |||||  || ||||  ||||||                                                      
ATCCCTACGTTCGCCC   TG GTG TCGAGTGAAT      TCCAA  TA TTCA  ATTGGG                                                     
                AGC  G   C          -----T     TT  -    CT      TACCCAAAAGCGCGGCACCGGACTGAATGGTACGGAGCCCTACGTTCACCCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630159

TAGGGATGCAAGCGGGCTAACACGCAAGCTCGCTTATAAGCAAAATTAGCGGGTACTCACCAACTGACTTGTGAGTTACCTACTAATTTAATCTAAAAATAGGTTTATGGGTTAACCCACTTGCATCCCGAGGCATGGTAAGTCAGGCCACGGCGCGAAAACCCATGGGTTATCACTTATTTAACCTTTAAGTGAGCTCGTGGGTCGACCCGCTTGCATCCCTA

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