Plant MITE

SE2630160

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7128
Oryza sativa
SE2630160
hAT
Hat28
Chr06:1615733-1615958
TAGGGGTG
TAGGGGTGCAAGTGGGCTTGTCCGCGAACCCGCTTATAGGCA

Secondary structure and sequence

TSD TIR

5'

3'

                  TG       ACC          -  -       --  C       ---------  G ---  TTGACCAGCGGGTTACCTATTAATTTGACCTATAAATGGAT
TAGGGGTGCAAGTGGGCT  TCCGCGA   CGCTTATAGG CA AAATTAG  TA GTAACCC         GC G   GT                                         
||||||||||||||||||  |||||||   |||||||||| || |||||||  || |||||||         || |   ||                                          
ATCCCTACGTTCGCCCGG  GGGCGTT   GTGAATATCC GT TATTTAC  TT AAGTACC         AG C   AG                                         
                  CT       CAA          A  T       TA  -       CAAAAGCGC  - ACC  GCCAAACGGCGTAGATCTATACGTTCACCTAGCTAGGTATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630160

TAGGGGTGCAAGTGGGCTTGTCCGCGAACCCGCTTATAGGCAAAATTAGTACGTAACCCGCGGGTTTGACCAGCGGGTTACCTATTAATTTGACCTATAAATGGATTTATGGATCGATCCACTTGCATATCTAGATGCGGCAAACCGGACCACGACGCGAAAACCCATGAATTATCATTTATTTGACCTATAAGTGAACTTGCGGGTCGGCCCGCTTGCATCCCTA

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