SE2630161

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7129
  • Oryza sativa
  • SE2630161
  • hAT
  • Hat28
  • Chr02:16318063-16318288
  • TAGGAATA
  • TAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
    AATAAAA      CA  -  GCGAACCT  TTATATGTTAAATAAAGGGTAATCCGCAGGTTTTCACGTTATGGCTCAGCTTGCCGCATCGTAGAGACGCAAGTGGATCAACCCAT
TAGG       GCGGGT  AC CT        AC                                                                                      
||||       ||||||  || ||        ||                                                                                      A
ATCC       CGTTCA  CC GG        TT                                                                                      
    ----CTA      --  C  --------  GGGTGTTTGGGCGAATATCCGTTTTAATCATTCATTGTACGCCCAACTGTGCACCCAATGGATAATTAAACTGTTTATTTACCCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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