SE2630162

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7130
  • Oryza sativa
  • SE2630162
  • hAT
  • Hat28
  • Chr01:42246306-42246518
  • TAGGGTTG
  • TAGGGTTGCAAGCGGGCCAACCCGCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
     T  C            C          C    AGGCAAAATTAGTAGGTAACCTACGGATCACCTACTGATTTGACTTATAAATGGGTTTATGGATCGGCCC
TAGGG TG AAGCGGGCCAAC CGCGAACCCG TTAT                                                                      
||||| || |||||||||||| |||||||||| ||||                                                                       
ATCCC AC TTCGCCCGGTTG GCGCTTGAAT GAAT                                                                      
     T  T            T          -    ATACAGTTTATTCACTATTGGGCATCCAAAAGTATAGCACTAAGCCGAACGACGTGAATCTCTATGTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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