SE2630163

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7131
  • Oryza sativa
  • SE2630163
  • hAT
  • Hat28
  • Chr07:25612888-25613105
  • AGGGTTGG
  • GGGTTGGCCAACCCGCCAACTCACTTATAGGTCAAATAAGTGGTAATCCGTGGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
A    T        ----C   ---AA   -          C    -A  -T      C        TTCACA    TACCC  C     ---------     TAGAGATACAAGTGGATC
 GGGT GGCCAACC     GCC     CTC ACTTATAGGT AAAT  AG  GGTAAT CGTGGGTT      TCGT     GG TTGCC         GTATC                  
 |||| ||||||||     |||     ||| |||||||||| ||||  ||  |||||| ||||||||      ||||     || |||||         |||||                  A
 TTCG CCGGTTGG     CGG     GGG TGAATATCCG TTTA  TC  CCATTG GCGCCCAA      AGCA     CC AATGG         TTGGA                  
G    C        ACACT   GCCTG   C          T    AA  TC      A        ---CCG    -----  C     ATGATTAAA     TATTTATCCAAATACCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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