Plant MITE

SE2630164

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7132
Oryza sativa
SE2630164
hAT
Hat29
Chr12:25753860-25754018
CAGTGGCG
CAGTGGCGAACCTAG

Secondary structure and sequence

TSD TIR

5'

3'

   T    AAC    AACAAAA    CCGA      A  ACATACCAATTATCTAATTATTGACTAATATATTAATTAATAT
CAG GGCG   CTAG       GTTA    GGGTCC AT                                           
||| ||||   ||||       ||||    |||||| ||                                           A
GTC TCGC   GATC       GATG    GGCCAC AG                                           
   C    ACA    -CAATAT    ----      -  TGTCCTGTGGCCCATCTAATAAGTTTAGGATATATTTAATGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630164

CAGTGGCGAACCTAGAACAAAAGTTACCGAGGGTCCAATACATACCAATTATCTAATTATTGACTAATATATTAATTAATATAGTGTAATTTATATAGGATTTGAATAATCTACCCGGTGTCCTGTGACACCGGGTAGTATAACCTAGACACGCTCCTG

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