Plant MITE

SE2630168

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7136
Oryza sativa
SE2630168
hAT
Hat33
Chr05:3118223-3118392
CAGGGGCG
CAGGGGCGTAGC

Secondary structure and sequence

TSD TIR

5'

3'

   G        ----CAAC   G  ---    C -   - ------ CACAGACCACCTAAAAATTTGAAATTATAGTATATGTGCTAGTTA
CAG GGCGTAGC        TAG TG   GCAC G TGG T      C                                             
||| ||||||||        ||| ||   |||| | ||| |      |                                             A
GTC CCGCATCG        TTT CA   TCAC C GGT G      A                                             
   A        ATCCTAAA   -  TTT    - A   A ATATAT TTATACAGTTAATTTTCCCACCAGGTGATATGTTGAAAATGATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630168

CAGGGGCGTAGCCAACTAGGTGGCACCGTGGTCCACAGACCACCTAAAAATTTGAAATTATAGTATATGTGCTAGTTAATATAGTAAAAGTTGTATAGTGGACCACCCTTTTAATTGACATATTATATATAGATGGACCACTTTTACTTTAAATCCTAGCTACGCCACTG

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