SE2630169

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7137
  • Oryza sativa
  • SE2630169
  • hAT
  • Hat34
  • Chr08:19460260-19460759
  • TAGGGGTG
  • TAGGGGTGAAAATAGGGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
             A      GTA    --   ACCG   G       TGAGGCTCGCGGGAGGAATATGGGAAAAAAAAACCTGATACTATCTGAGTTCGAATATTCGCTAGGAAAATATGGGGTACGATACGGGAAGACATGTATCCGCCCGTATGTCCCATATTATAAAATATGTATGACAATTTATTATAAATCCACCTAAAACGTGATAAAAGATTGGTTAATCATTATTTTACGTGTTCATATGTAATA
TAGGGGTGAAAAT GGGCGG   TTTC  CCA    CCT CCCGACC                                                                                                                                                                                                               
||||||||||||| ||||||   ||||  |||    ||| |||||||                                                                                                                                                                                                               T
ATCCCCACTTTTG CCCGCC   TGTT  GTT    TAA TACTGTA                                                                                                                                                                                                               
             -      -AA    TA   ----   -       AGGGTATAGTATTGGGCATAACAGAAAATTTAAGCCTCGGCCCATGCCAATCATGGCTTATTGTATAGTGAGTAGGAGATTAGGATAGGGTATAATAAAGGAAGCGTAGCCTAAGCCCTTGCCTATAATTAAACATAGAGATTAAGTATATAATTTATATTATTCCATTAATTTCGTGATTTCTCTATGTAGTTCTTTTTTATATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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