Plant MITE

SE2630170

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7138
Oryza sativa
SE2630170
hAT
Hat35
Chr09:2968204-2968460
TAGGGATG
TAGGGATGAAAACGGTTGGAAATGGTCGGAAACGGTACATTATT

Secondary structure and sequence

TSD TIR

5'

3'

     A          -       GG  G  AA G     -T    TTA  -   T   -  -   AACGAACGGAAACGGTCGGGAAATTTCCATATTTATGAATTCATCTATTTATTGTCAACTTCAATG
TAGGG TGAAAACGGT TGGAAAT  TC GA  C GTACA  TATT   TT ATT TTT TC GAA                                                                  
||||| |||||||||| |||||||  || ||  | |||||  ||||   || ||| ||| || |||                                                                  C
ATCCC ACTTTTGCCA GCCTTTA  GG CT  G CATGT  ATGG   AG CGT TTT AT ATA                                                                  
     C          T       AA  G  -- G     CT    CAA  G   -   G  T   TTATTATTATAAAAATGGCTACAATGGCAAAAGTTTAAATTCAAAAAAAATTAAAGACAGTCACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630170

TAGGGATGAAAACGGTTGGAAATGGTCGGAAACGGTACATTATTTTATTATTTTTTTCGAAAACGAACGGAAACGGTCGGGAAATTTCCATATTTATGAATTCATCTATTTATTGTCAACTTCAATGCCACACTGACAGAAATTAAAAAAAACTTAAATTTGAAAACGGTAACATCGGTAAAAATATTATTATTATATTAGTTTTGCGGAAACGGTATCTGTACGGTCGGGAAATTTCCGTACCGTTTTCACCCCTA

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