SE2630171

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7139
  • Oryza sativa
  • SE2630171
  • hAT
  • Hat4
  • Chr02:3026936-3027618
  • CAGGGCCG
  • CAGGGCCGGCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
         C   ---    -  ATGCA   GA   GACCGCCGGGGGCCCATGATGGTGGAGGGGCCAACACCTAATACTAGTAGTCTAGTACCTCATCCGATGTTGAGATCAATGATCTTTATTCAGAATTAAAGGTGTGATTCTTCGATATTCGCGCCTGAGATTCTGAAGTTCGTTATGGATGCAGATTGCTATCCAAATGTTTTAGTTGCCTATCGAAATCTCTTAACTGTACCTATGACTGTAGCTTCAGCTGAAAGAAGTTTCTCAAACTTGAAGTTTTGAAGAACTATTTGAGATCAACTATGTCACAAGAAAGGTTAAATGGCTTGGCTATGTGCTCA
CAGGGCCGG CCT   GGCC CT     GCC  GGC                                                                                                                                                                                                                                                                                                                       
||||||||| |||   |||| ||     |||  |||                                                                                                                                                                                                                                                                                                                        
GTCCCGGCC GGA   TAAA CT     CCC  GGG                                                                                                                                                                                                                                                                                                                       
         A   TAC    A  -----   --   ATTCGCTTGAGTAGCACTACCCGGGAGATTTGATATATATTTTAAAATACTATATATCTATTATTAAAATGAACGTTTTGCTATTGTTTATGTAGGTATATAATTTAAATTGTACAGACCATTAATACTTCTTTATTTTTATTGTTATATAAATATTGAACCTTGATTATAGTAATAAGTAATTGAATTACTTATTGTTTTGGGGTAGTATAGGCAACGAGGGTACTTTTCTATAAAGAAGCCCATAAAGAACTACGTTTTAGTAGTTATTGCCATAATTCTAGTTATCACAAGTTCTATAGGAAGAGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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