SE2630172

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7140
  • Oryza sativa
  • SE2630172
  • hAT
  • Hat37
  • Chr03:21145838-21146015
  • CAGGGGCG
  • CAGGGGCGGATCCAGCATGGGGCGGCGGGGTCTCGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
   G           CAT  ---     C       C    CCC   TACTGACGTGAAGACTATGAGAGACCCCACAAAGACCCCACTAAA
CAG GGCGGATCCAG   GG   GGCGG GGGGTCT GAGC   CAC                                             
||| |||||||||||   ||   ||||| ||||||| ||||   |||                                             A
GTC CCGCCTAGGTC   CT   TCGTC TCCCAGA CTCG   TTT                                             
   A           TTT  TTA     A       -    ---   GATCTATCTCAATGTCAGGGGGAGGGTAGATGTATACCATTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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