Plant MITE

SE2630173

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7141
Oryza sativa
SE2630173
hAT
Hat38
Chr04:26366341-26366518
CAGGGGCG
CAGGGGCGGATCTAG

Secondary structure and sequence

TSD TIR

5'

3'

               AACA  ATTTAA         ATCTTCTTCTTTTTTCGTC          -    TTCATTTT  T    ATCCTTCCCCTTTCA
CAGGGGCGGATCTAG    AG      GGGGGACTC                   AGTTCCCCCT CCTC        TT CCAT               
|||||||||||||||    ||      |||||||||                   |||||||||| ||||        || ||||                
GTCCCCGCCTAGGTC    TC      CCCCCTGAG                   TCAGGGGGGA GGAG        AG GGTA               
               -GTA  CATGAC         ------------------C          T    --CGACCT  T    ACAATCTTCCCTTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630173

CAGGGGCGGATCTAGAACAAGATTTAAGGGGGACTCATCTTCTTCTTTTTTCGTCAGTTCCCCCTCCTCTTCATTTTTTTCCATATCCTTCCCCTTTCATCTTCCCTTCTAACAATGGTGATCCAGCGAGGTAGGGGGGACTCGAGTCCCCCCAGTACCTATGCTGGATCCGCCCCTG

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