SE2630174

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7142
  • Oryza sativa
  • SE2630174
  • hAT
  • Hat39
  • Chr06:1019801-1020328
  • CAGTGGCG
  • CAGTGGCGGAGCCAGGATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
              -- -      AAAGT              TAAGCGTTGAGCCGTTGCCCGTCCCTGCCCCTTGCGGCCGCCGGCCATCCAACCGACCTGACCGCCTTAGCTTGGCGGAGTGTCGGGCGCCGCCCGCCGCGGCAATGGCCTCCCCCTCCGCGGTAGCACAGTCCAGCTCCCGCCGCCGATTGCCGTCTCGCCGCGCCGCCACCTAGGGTTTGCAAATGGGGAGTGGCGCGAGGGAGCCGAGCCAAGGAGGGATGG
CAGTGGCGGAGCCA  G GATTTC     TGGGTATTCCCGTC                                                                                                                                                                                                                                 
||||||||||||||  | ||||||     ||||||||||||||                                                                                                                                                                                                                                  
GTCACCGCCTCGGT  C CTAAGG     GCCCATAAGGGCCC                                                                                                                                                                                                                                 
              GG A      -----              TTATGGGTTGTAAAAAATAGTCTTTTGTTCATATGAAGATCATATATGTGTACATGTGTATAAACATGTGGATTTAGGAGTTGAGAAACTAGGTTTGTATCGTGTTGACCAGAGAACGCTACGGAGGTTGGTTGGGCTGGATGAGGCAGTACTGGGTAGTTTGTAGTCAACTGGGTGAATCGATCGTGAGAAAGTCTGTCGGGGGAGAGCGAGAGGGAGGCACTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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